A virus to identify small peptide mimics of antifreeze proteins
Scientists at EPFL and the University of Warwick have used a virus to identify a peptide that can serve the same function as antifreeze proteins. By preventing ice formation, the compound could play a key role in preserving cells and organ transplants and in food conservation.
Some organisms have developed special “antifreeze” proteins that let them survive in sub-zero temperatures. These proteins prevent ice formation by binding to ice crystals as soon as they appear. But exactly how they work remains a mystery. “Ice formation is a major threat to organisms because it destroys their cells and eventually kills them,” says Corey Stevens, a scientist at the Polymers Laboratory in EPFL’s School of Engineering.
A key role in cell and tissue preservation
The threat of ice formation is a major obstacle in many fields, and especially when it comes to storing human blood, cells and even organs for transplant. Organs can be kept in cold storage for only a few hours before they become unusable, and when cryopreserving cells only a fraction are recovered. Antifreeze proteins could be a way around that problem – and could result in many more people receiving cell-based therapies by improving how cells are stored and transported. But scientists first need to better understand the mechanisms behind these proteins so they can produce synthetic compounds with the same properties.
Screening millions of compounds to find the right one
EPFL scientists, collaborating with colleagues at the University of Warwick, have isolated a peptide that can bind to ice and prevent ice crystals from forming, just like antifreeze proteins do. To find this peptide they employed a method called phage display. Phages are viruses that can have several copies of a peptide on their surface and that can be used to identify peptides capable of binding to another specific surface – like ice. The scientists screened a library of billions of phages, each with a different peptide, to find the best candidates. They then amplified those peptides and eliminated the others, and repeated this process several times. In the end they came up with a 14-amino-acid, cyclic peptide that binds particularly well to ice.
"Because we still don’t fully understand how antifreeze proteins work, we can’t yet rationally design synthetic compounds that mimic them,” says Harm-Anton Klok, an EPFL professor and the head of the Polymers Laboratory. “So for our research, we decided to take the opposite approach – we started with billions of compounds and went through them one by one to find those with the properties we’re looking for.” Their findings have been published in Nature Communications.